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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
5
DNase-seq
3
Hi-C
3
single cell RNA-seq
1
RRBS
Assay category
9
DNA binding
5
DNA accessibility
3
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
6
control
3
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
9
November, 2017
7
July, 2019
5
June, 2019
Available data
20
bigWig
17
bam
11
bed broadPeak
11
bed narrowPeak
11
bigBed broadPeak
11
bigBed narrowPeak
9
fastq
8
bed bed3+
3
hdf5
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
21
Homo sapiens
Biosample type
265
tissue
21
primary cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
21
AMP
Genome assembly (visualization)
21
hg19
14
GRCh38
Lab
21
AMP-T2D consortium
assay_slims!
DNA sequencing
organ_slims!
embryo
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
RRBS
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
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