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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
125
ChIP-seq
31
DNase-seq
31
total RNA-seq
28
single cell RNA-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
161
DNA accessibility
125
DNA binding
61
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
95
histone
95
histone modification
51
broad histone mark
44
narrow histone mark
23
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
55
June, 2019
55
May, 2021
34
October, 2019
31
July, 2019
18
August, 2017
12
February, 2023
11
July, 2018
10
April, 2018
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
2
June, 2018
1
March, 2020
1
November, 2018
1
September, 2018
Available data
241
bigWig
235
bam
143
bed narrowPeak
87
bigBed narrowPeak
66
tsv
51
fastq
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
365
Homo sapiens
Biosample type
2205
tissue
562
cell line
391
in vitro differentiated cells
365
primary cell
8
stem cell
Organ
254
epithelium
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
365
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
263
hg19
163
GRCh38
Lab
330
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
44
inconsistent ontology term
1
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
DNA sequencing
organ_slims!
pancreas
BIOSAMPLE
ASSAY
365 results
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ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
single cell RNA-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
CD8-positive, alpha-beta T cell
2
33
2
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
2
1
skeletal muscle myoblast
15
2
1
1
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