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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
77
ChIP-seq
Assay category
197
DNA accessibility
77
DNA binding
Target of assay
49
transcription factor
28
histone
28
histone modification
14
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
64
November, 2017
15
August, 2017
7
November, 2018
4
October, 2019
1
November, 2020
Available data
2683
bam
2531
bigWig
1590
bed narrowPeak
1183
tsv
938
bigBed narrowPeak
887
fastq
379
tagAlign
297
bed broadPeak
274
bigBed broadPeak
242
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
15
bedpe bed3+
14
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
tar
2
ibed
1
tagAlign bed3+
Organism
274
Homo sapiens
Biosample type
170
tissue
58
cell line
45
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
pancreas
4
artery
4
eye
vein
2
adipose tissue
2
nerve
1
spleen
Project
274
AMP
Genome assembly (visualization)
258
GRCh38
253
hg19
Lab
274
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA sequencing
organ_slims!
pancreas
vein
BIOSAMPLE
ASSAY
274 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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