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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
ChIP-seq
235
total RNA-seq
198
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
47
WGBS
19
DNase-seq
15
pCHi-C
8
RRBS
5
Hi-C
1
DNAme array
1
small RNA-seq
Assay category
419
Transcription
273
DNA accessibility
244
DNA binding
56
DNA methylation
5
3D chromatin structure
Target of assay
212
histone
212
histone modification
109
broad histone mark
103
narrow histone mark
28
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
46
July, 2018
45
February, 2021
41
April, 2018
34
June, 2019
18
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
552
bigWig
541
bam
400
fastq
257
bed narrowPeak
253
tsv
153
zippedFastqFolder
100
tagAlign
73
bigBed narrowPeak
31
bed broadPeak
31
bigBed broadPeak
21
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
1
hdf5
Organism
1012
Homo sapiens
Biosample type
2097
tissue
1012
primary cell
595
cell line
297
in vitro differentiated cells
9
stem cell
Organ
406
epithelium
346
pancreas
connective tissue
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
484
AMP
324
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
563
hg19
482
GRCh38
Lab
449
AMP-T2D consortium
324
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
40
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA sequencing
organ_slims!
vasculature
connective tissue
BIOSAMPLE
ASSAY
1012 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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