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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
30
DNase-seq
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
200
DNA binding
34
DNA accessibility
7
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
177
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
26
control
Date released
85
October, 2019
82
November, 2017
30
June, 2019
28
May, 2019
14
July, 2019
6
October, 2017
2
March, 2020
1
February, 2023
Available data
238
bam
217
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
fastq
9
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
248
Homo sapiens
Biosample type
236
tissue
12
primary cell
Organ
321
heart
294
kidney
256
pancreas
248
brain
217
epithelium
169
vasculature
166
blood vessel
141
liver
115
limb
109
connective tissue
97
bone element
88
musculature of body
85
artery
49
adipose tissue
42
eye
38
nerve
22
vein
20
lung
18
ureter
12
skeleton
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
248
AMP
Genome assembly (visualization)
197
GRCh38
142
hg19
Lab
248
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_slims!
DNA sequencing
assay_title!
total RNA-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
248 results
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ChIP-seq
DNase-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
11
12
1
1
layer of hippocampus
23
caudate nucleus
15
1
substantia nigra
16
temporal lobe
15
1
+ See 74 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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