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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
RRBS
pCHi-C
Assay category
46
DNA binding
12
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
25
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
25
November, 2017
12
February, 2020
10
October, 2019
9
October, 2017
3
May, 2019
2
July, 2019
1
February, 2023
Available data
243
bam
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
24
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
62
Homo sapiens
Biosample type
61
tissue
1
primary cell
Organ
322
pancreas
223
epithelium
221
kidney
166
heart
165
liver
109
connective tissue
100
bone element
80
vasculature
79
blood vessel
64
adipose tissue
62
brain
56
artery
51
eye
31
limb
27
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
8
embryo
8
spleen
7
vein
4
gonad
4
ovary
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
62
AMP
Genome assembly (visualization)
5
hg19
3
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
DNA sequencing
files.file_type!
bigWig
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 21 more…
primary cell
choroid plexus epithelial cell
1
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