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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
46
ChIP-seq
16
total RNA-seq
14
ATAC-seq
3
pCHi-C
2
RRBS
Assay category
46
DNA binding
16
Transcription
14
DNA accessibility
2
DNA methylation
Target of assay
25
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
92
February, 2021
25
November, 2017
12
February, 2020
10
October, 2019
9
February, 2023
9
October, 2017
3
May, 2019
2
July, 2019
2
March, 2020
1
May, 2021
Available data
309
bam
bigWig
211
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
88
txt
84
tsv
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
5
bed bed3
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
165
Homo sapiens
Biosample type
163
tissue
2
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
168
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
164
AMP
1
T1D
Genome assembly (visualization)
17
hg19
11
GRCh38
Lab
164
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
DNA sequencing
files.file_type!
bigWig
BIOSAMPLE
ASSAY
165 results
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RNA microarray
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
RRBS
tissue
bone element
84
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
+ See 35 more…
primary cell
choroid plexus epithelial cell
1
megakaryocyte
1
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