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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
ChIP-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
21
Transcription
3
3D chromatin structure
3
DNA binding
2
DNA methylation
Target of assay
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
15
July, 2019
12
February, 2020
3
November, 2017
2
March, 2020
2
November, 2018
2
October, 2019
1
February, 2023
1
October, 2017
Available data
50
bigWig
47
bam
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
23
tsv
6
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
68
Homo sapiens
Biosample type
56
tissue
12
primary cell
Organ
742
pancreas
580
liver
571
connective tissue
435
adipose tissue
401
epithelium
312
kidney
271
heart
159
bone element
143
vasculature
139
blood vessel
112
artery
68
brain
62
blood
62
bodily fluid
57
eye
57
musculature of body
56
limb
20
lung
18
embryo
18
ureter
16
skeleton
11
spleen
8
nerve
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
46
GRCh38
41
hg19
Lab
68
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA sequencing
target.investigated_as!
histone
control
BIOSAMPLE
ASSAY
68 results
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DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
ChIP-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
1
caudate nucleus
1
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
1
1
brain microvascular endothelial cell
1
1
1
choroid plexus epithelial cell
1
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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