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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
161
DNase-seq
122
ATAC-seq
91
ChIP-seq
16
small RNA-seq
11
Hi-C
9
RRBS
4
FAIRE-seq
1
snATAC-seq
Assay category
918
Transcription
288
DNA accessibility
91
DNA binding
11
3D chromatin structure
9
DNA methylation
Target of assay
histone modification
437
histone
239
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
147
June, 2019
143
May, 2020
120
August, 2017
116
July, 2018
60
July, 2019
40
November, 2019
39
May, 2022
38
May, 2021
33
February, 2023
31
December, 2017
17
November, 2018
16
March, 2020
16
October, 2019
15
October, 2018
7
October, 2017
6
April, 2018
5
April, 2019
4
May, 2019
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1234
bam
1211
bigWig
918
tsv
344
bed narrowPeak
233
bigBed narrowPeak
221
fastq
177
bed bed3+
161
bed broadPeak
160
bigBed broadPeak
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
txt
Organism
1317
Homo sapiens
Biosample type
1317
tissue
493
cell line
398
primary cell
220
in vitro differentiated cells
1
stem cell
Organ
480
connective tissue
422
adipose tissue
348
pancreas
218
liver
72
kidney
70
bone element
53
heart
48
limb
42
musculature of body
30
eye
29
brain
18
ureter
16
blood vessel
16
vasculature
12
epithelium
12
skeleton
8
spleen
7
artery
7
nerve
1
pericardium
Project
1317
AMP
Genome assembly (visualization)
1365
GRCh38
1317
hg19
Lab
1274
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
2
inconsistent ontology term
1
audit script error
Audit category:
18
missing controlled_by
assay_slims!
DNA sequencing
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1317 results
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total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
3
islet of Langerhans
266
1
42
9
2
1
1
liver
147
2
20
38
1
1
1
bone tissue
58
heart
4
16
1
1
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