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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
85
single cell RNA-seq
66
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
282
Transcription
126
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Target of assay
88
histone
histone modification
44
broad histone mark
44
narrow histone mark
Date released
134
May, 2022
99
February, 2023
68
May, 2021
59
September, 2020
45
February, 2021
45
May, 2020
16
January, 2021
7
August, 2020
4
March, 2020
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
108
bigWig
104
tsv
98
bam
3
bedpe bed3+
3
cool
3
hic
Organism
480
Homo sapiens
Biosample type
444
primary cell
29
tissue
7
cell line
Organ
182
pancreas
154
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3362
AMP
324
HPAP
156
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
108
GRCh38
101
hg19
Lab
324
Klaus Kaestner, Upenn
152
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
30
audit script error
7
inconsistent ontology term
assay_slims!
DNA sequencing
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
480 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
monocyte
53
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 36 more…
tissue
islet of Langerhans
7
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
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