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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
Assay category
95
DNA binding
Target of assay
687
histone modification
686
histone
485
transcription factor
357
narrow histone mark
328
broad histone mark
267
control
95
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
34
November, 2017
21
November, 2018
6
January, 2019
5
May, 2021
5
May, 2024
5
October, 2018
4
April, 2019
4
August, 2017
4
December, 2017
4
May, 2019
2
December, 2018
1
August, 2021
Available data
87
bed narrowPeak
87
bigWig
84
bam
77
bigBed narrowPeak
76
fastq
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
95
Homo sapiens
Biosample type
64
cell line
20
tissue
11
in vitro differentiated cells
primary cell
Organ
58
liver
10
blood
10
bodily fluid
10
heart
9
connective tissue
pancreas
5
adipose tissue
3
blood vessel
3
epithelium
3
vasculature
1
artery
1
kidney
Project
95
AMP
Genome assembly (visualization)
82
GRCh38
81
hg19
Lab
84
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
assay_slims!
DNA sequencing
biosample_type!
primary cell
organ_slims!
pancreas
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
cell line
HepG2
54
GM12878
10
tissue
left cardiac atrium
5
heart left ventricle
3
omental fat pad
3
subcutaneous adipose tissue
2
ascending aorta
1
+ See 6 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
See all biosamples
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