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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
200
ATAC-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
1
FAIRE-seq
Assay category
Transcription
288
DNA accessibility
279
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
150
May, 2021
100
May, 2020
60
May, 2022
58
August, 2017
55
June, 2019
46
September, 2018
32
October, 2019
29
February, 2021
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
4
July, 2019
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
359
bigWig
357
bam
295
bed narrowPeak
154
fastq
109
bigBed narrowPeak
100
tagAlign
60
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
12
tsv
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
594
Homo sapiens
Biosample type
1472
tissue
594
primary cell
546
cell line
256
in vitro differentiated cells
8
stem cell
Organ
190
epithelium
144
pancreas
34
vasculature
29
blood vessel
27
kidney
23
connective tissue
22
vein
17
brain
11
musculature of body
8
blood
8
bodily fluid
8
heart
8
liver
4
eye
1
bone element
1
bone marrow
Project
385
AMP
108
T1D
100
HPAP
1
ITG
Genome assembly (visualization)
364
hg19
284
GRCh38
Lab
352
AMP-T2D consortium
141
Kyle Gaulton, UCSD
100
Klaus Kaestner, Upenn
1
ITG
Audit category:
41
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
DNA methylation
BIOSAMPLE
ASSAY
594 results
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ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
primary cell
monocyte
85
15
1
pancreatic alpha cell
13
35
1
Langerhans cell
48
pancreatic beta cell
13
23
1
CD8-positive, alpha-beta T cell
33
2
1
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