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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
76
snATAC-seq
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
88
DNA binding
76
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
102
May, 2021
62
May, 2022
33
February, 2021
16
January, 2021
10
April, 2020
7
February, 2023
3
March, 2020
3
October, 2022
1
March, 2023
Available data
88
bam
88
bed narrowPeak
88
bigWig
84
tagAlign
62
zippedFastqFolder
33
fastq
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
236
Homo sapiens
Biosample type
207
primary cell
23
tissue
7
cell line
Organ
64
pancreas
52
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
128
T1D
98
HPAP
10
LungMap
1
ITG
Genome assembly (visualization)
91
hg19
89
GRCh38
Lab
124
Kyle Gaulton, UCSD
98
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
4
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
3
inconsistent ontology term
assay_slims!
Transcription
assay_title!
ATAC-seq
award.project!
AMP
BIOSAMPLE
ASSAY
237 results
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ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
Langerhans cell
48
pancreatic alpha cell
31
1
pancreatic beta cell
16
1
peripheral blood mononuclear cell
8
+ See 16 more…
tissue
lung
10
islet of Langerhans
2
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
See all biosamples
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