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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
46
ATAC-seq
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
Transcription
46
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
50
May, 2019
35
February, 2023
24
October, 2019
14
February, 2021
4
July, 2019
2
March, 2020
Available data
107
bed narrowPeak
92
bam
65
bigWig
57
bigBed narrowPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tsv
Organism
129
Homo sapiens
Biosample type
115
tissue
primary cell
14
cell line
Organ
585
liver
268
pancreas
217
brain
191
heart
176
connective tissue
130
kidney
129
blood vessel
129
vasculature
96
bone element
88
adipose tissue
79
artery
79
epithelium
79
limb
61
blood
61
bodily fluid
43
musculature of body
36
nerve
34
eye
24
spleen
23
embryo
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
129
AMP
Genome assembly (visualization)
108
GRCh38
73
hg19
Lab
129
AMP-T2D consortium
assay_slims!
Transcription
assay_title!
DNase-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
129 results
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ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
tibial artery
23
1
aorta
13
2
1
1
thoracic aorta
16
1
ascending aorta
16
cell line
smooth muscle cell of the coronary artery
6
8
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