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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
114
ChIP-seq
2
ATAC-seq
Assay category
114
DNA binding
2
DNA accessibility
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
39
August, 2017
4
October, 2017
2
October, 2019
1
March, 2019
Available data
1777
bam
1608
bed narrowPeak
1558
bigWig
975
fastq
833
bigBed narrowPeak
398
tagAlign
116
bed broadPeak
101
zippedFastqFolder
89
txt
79
bigBed broadPeak
67
bed bed3+
64
xls
56
tsv
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
110
Homo sapiens
Biosample type
58
cell line
37
tissue
21
primary cell
Organ
58
liver
15
brain
14
pancreas
13
musculature of body
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
116
AMP
Genome assembly (visualization)
115
hg19
77
GRCh38
Lab
114
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_slims!
Transcription
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
116 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
See all biosamples
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