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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
DNase-seq
4
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
28
May, 2019
16
October, 2017
7
July, 2019
2
March, 2020
1
February, 2023
Available data
199
bam
178
bigWig
171
bed narrowPeak
118
tagAlign
95
bigBed narrowPeak
19
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
230
Homo sapiens
Biosample type
217
tissue
13
primary cell
Organ
592
liver
459
pancreas
304
epithelium
230
brain
197
heart
194
connective tissue
158
vasculature
154
blood vessel
148
kidney
97
bone element
88
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
54
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
20
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
230
AMP
Genome assembly (visualization)
173
GRCh38
130
hg19
Lab
230
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
Transcription
assay_title!
DNase-seq
organ_slims!
skin of body
BIOSAMPLE
ASSAY
230 results
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ChIP-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 68 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
brain pericyte
1
See all biosamples
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