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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
200
ATAC-seq
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
279
DNA binding
232
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
100
May, 2020
80
May, 2022
59
August, 2017
55
June, 2019
46
September, 2018
32
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
February, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
359
bigWig
357
bam
295
bed narrowPeak
134
fastq
109
bigBed narrowPeak
100
tagAlign
80
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
596
Homo sapiens
Biosample type
1482
tissue
596
primary cell
547
cell line
256
in vitro differentiated cells
8
stem cell
Organ
243
epithelium
191
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
5
eye
1
bone element
1
bone marrow
Project
396
AMP
100
T1D
99
HPAP
1
ITG
Genome assembly (visualization)
374
hg19
284
GRCh38
Lab
363
AMP-T2D consortium
133
Kyle Gaulton, UCSD
99
Klaus Kaestner, Upenn
1
ITG
Audit category:
43
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
596 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
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