Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
18
snATAC-seq
17
pCHi-C
16
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
40
DNA binding
34
DNA accessibility
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
8
control
5
RNA binding protein
Date released
62
May, 2021
18
February, 2023
16
January, 2021
Available data
bed narrowPeak
122
bigWig
102
bam
84
tagAlign
18
fastq
Organism
96
Homo sapiens
Biosample type
42
in vitro differentiated cells
27
primary cell
22
tissue
5
cell line
Organ
21
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
51
T1D
45
AMP
Genome assembly (visualization)
8
hg19
Lab
893
AMP-T2D consortium
147
Klaus Kaestner, Upenn
96
Kyle Gaulton, UCSD
18
Katalin Susztak, Upenn
13
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
whole genome sequencing assay
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
96 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
in vitro differentiated cells
embryonic stem cell
37
5
primary cell
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
3
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
Download