Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
5
DNase-seq
3
ATAC-seq
1
WGBS
Assay category
360
DNA binding
Transcription
8
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
81
recombinant protein
70
histone modification
69
histone
51
RNA binding protein
41
narrow histone mark
28
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
1
control
Date released
217
November, 2017
52
November, 2018
50
December, 2017
19
August, 2017
19
May, 2020
6
October, 2019
3
August, 2021
2
June, 2019
1
February, 2021
Available data
369
bam
367
bed narrowPeak
366
bigWig
338
fastq
326
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
31
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
369
Homo sapiens
Biosample type
263
cell line
86
tissue
14
in vitro differentiated cells
6
primary cell
Organ
369
liver
229
pancreas
205
brain
196
heart
193
kidney
148
epithelium
133
vasculature
129
blood vessel
92
limb
91
connective tissue
74
artery
54
blood
54
bodily fluid
47
musculature of body
27
nerve
25
adipose tissue
18
ureter
16
spleen
12
vein
9
embryo
8
bone element
8
skeleton
6
eye
1
pituitary gland
Project
369
AMP
Genome assembly (visualization)
463
hg19
369
GRCh38
Lab
369
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
23
inconsistent control read length
6
inconsistent control run_type
assay_slims!
Transcription
assay_title!
whole genome sequencing assay
month_released!
February, 2018
BIOSAMPLE
ASSAY
369 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
cell line
HepG2
261
1
1
tissue
liver
75
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
Download