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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
529
ChIP-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
whole genome sequencing assay
Assay category
529
DNA binding
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
60
December, 2017
54
August, 2017
51
May, 2020
48
November, 2018
25
August, 2021
20
May, 2022
6
October, 2019
3
July, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
Available data
496
bam
437
bigWig
437
fastq
418
bed narrowPeak
335
bigBed narrowPeak
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
Organism
574
Homo sapiens
Biosample type
366
cell line
185
tissue
14
in vitro differentiated cells
9
primary cell
Organ
574
liver
467
pancreas
322
epithelium
262
brain
229
kidney
227
heart
201
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
59
blood
59
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
574
AMP
Genome assembly (visualization)
440
hg19
348
GRCh38
Lab
533
AMP-T2D consortium
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
16
inconsistent control read length
assay_slims!
Transcription
assay_title!
whole genome sequencing assay
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
574 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
cell line
HepG2
358
1
1
2
2
2
tissue
liver
143
20
2
3
1
1
1
right lobe of liver
10
1
2
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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