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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
ChIP-seq
2
pCHi-C
Assay category
Transcription
41
DNA accessibility
6
DNA methylation
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
406
November, 2017
322
August, 2017
258
October, 2019
217
May, 2021
216
June, 2019
151
May, 2020
140
May, 2022
139
August, 2021
138
February, 2021
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
February, 2023
74
October, 2018
49
March, 2020
46
September, 2018
42
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
7
August, 2020
5
March, 2019
4
October, 2022
3
January, 2018
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
84
txt
33
fastq
13
bam
11
bed narrowPeak
9
tsv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
bigWig
2
tagAlign
Organism
138
Homo sapiens
Biosample type
95
tissue
35
primary cell
4
cell line
4
in vitro differentiated cells
Organ
92
bone element
artery
14
blood vessel
14
heart
14
vasculature
8
skeleton
6
connective tissue
6
epithelium
6
limb
6
pancreas
3
kidney
2
liver
Project
105
AMP
33
HPAP
Genome assembly (visualization)
17
hg19
11
GRCh38
Lab
105
AMP-T2D consortium
33
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
1
inconsistent replicate
assay_slims!
Transcription
assembly!
hg18
organ_slims!
artery
BIOSAMPLE
ASSAY
138 results
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RNA microarray
snATAC-seq
ATAC-seq
WGBS
snDrop-seq
ChIP-seq
pCHi-C
tissue
bone element
84
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 7 more…
primary cell
Langerhans cell
27
pancreatic alpha cell
6
osteoblast
1
1
cell line
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
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