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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
56
snATAC-seq
47
WGBS
32
ChIP-seq
16
pCHi-C
9
DNase-seq
1
DNAme array
1
Hi-C
Assay category
Transcription
181
DNA accessibility
48
DNA methylation
32
DNA binding
1
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
101
May, 2022
55
May, 2020
33
February, 2021
21
May, 2021
15
June, 2019
12
August, 2017
12
February, 2023
8
January, 2021
8
October, 2019
7
August, 2020
3
September, 2020
1
August, 2021
1
March, 2023
1
May, 2019
Available data
101
zippedFastqFolder
55
fastq
35
bam
18
tsv
17
bigWig
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
1
hic
1
tagAlign
Organism
278
Homo sapiens
Biosample type
673
tissue
278
primary cell
121
cell line
86
in vitro differentiated cells
5
stem cell
Organ
126
epithelium
108
pancreas
11
kidney
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
5
connective tissue
5
vein
3
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
1
liver
Project
144
HPAP
109
AMP
24
T1D
1
ITG
Genome assembly (visualization)
hg19
284
GRCh38
Lab
144
Klaus Kaestner, Upenn
109
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
27
audit script error
12
inconsistent ontology term
assay_slims!
Transcription
assembly!
hg19
BIOSAMPLE
ASSAY
278 results
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ATAC-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
DNase-seq
DNAme array
Hi-C
primary cell
pancreatic alpha cell
29
31
6
Langerhans cell
48
pancreatic beta cell
16
16
6
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
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