Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
128
DNA binding
77
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
18
control
13
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
35
February, 2023
35
June, 2019
21
May, 2019
14
July, 2019
8
February, 2021
6
October, 2019
5
March, 2020
Available data
191
bed narrowPeak
154
bigWig
141
bam
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
tagAlign
3
bedpe bed3+
3
hic
3
tsv
Organism
221
Homo sapiens
Biosample type
204
tissue
9
primary cell
8
cell line
Organ
512
liver
444
pancreas
311
epithelium
227
kidney
221
heart
181
connective tissue
162
vasculature
156
blood vessel
144
brain
115
limb
97
bone element
82
adipose tissue
77
artery
71
musculature of body
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
21
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
221
AMP
Genome assembly (visualization)
192
GRCh38
114
hg19
Lab
181
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
assay_slims!
Transcription
audit.ERROR.category!
audit script error
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
221 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
2
3
4
1
1
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
+ See 2 more…
primary cell
cardiac fibroblast
5
3
1
cell line
smooth muscle cell of the coronary artery
8
See all biosamples
Download