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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
386
ChIP-seq
Assay category
386
DNA binding
Target of assay
317
histone
317
histone modification
173
narrow histone mark
144
broad histone mark
65
control
4
transcription factor
Date released
90
May, 2021
85
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
10
October, 2017
February, 2021
Available data
1871
bam
1746
bed narrowPeak
1675
bigWig
1027
bigBed narrowPeak
865
fastq
386
tagAlign
320
bed broadPeak
285
bigBed broadPeak
255
bed bed3+
101
zippedFastqFolder
64
xls
47
tsv
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
5
hdf5
5
txt
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
379
Homo sapiens
Biosample type
234
tissue
100
primary cell
40
in vitro differentiated cells
12
cell line
Organ
114
brain
86
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
1
pituitary gland
Project
302
AMP
84
T1D
Genome assembly (visualization)
238
GRCh38
230
hg19
Lab
302
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
assay_slims!
Transcription
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
February, 2021
BIOSAMPLE
ASSAY
386 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
See all biosamples
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