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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
1
ChIP-seq
Assay category
12
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
10
February, 2023
2
February, 2021
1
October, 2019
Available data
1898
bam
1769
bed narrowPeak
1681
bigWig
1027
bigBed narrowPeak
898
fastq
394
tagAlign
320
bed broadPeak
285
bigBed broadPeak
257
bed bed3+
101
zippedFastqFolder
89
txt
64
xls
56
tsv
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
6
tissue
5
in vitro differentiated cells
1
cell line
1
primary cell
Organ
6
connective tissue
4
bone element
4
skeleton
2
brain
1
liver
Project
13
AMP
Genome assembly (visualization)
13
hg19
3
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent replicate
assay_slims!
Transcription
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
13 results
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ATAC-seq
ChIP-seq
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
medial globus pallidus
1
+ See 1 more…
in vitro differentiated cells
chondrocyte
5
cell line
HepG2
1
primary cell
osteoblast
1
See all biosamples
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