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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
84
DNA binding
29
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
101
May, 2021
18
February, 2023
16
January, 2021
Available data
84
bam
84
bed narrowPeak
84
bigWig
84
tagAlign
Organism
135
Homo sapiens
Biosample type
108
primary cell
22
tissue
5
cell line
Organ
21
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
244
AMP
147
HPAP
135
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
84
GRCh38
84
hg19
Lab
135
Kyle Gaulton, UCSD
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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