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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
27
ChIP-seq
13
DNase-seq
6
snATAC-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
Transcription
95
DNA accessibility
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
71
August, 2021
23
April, 2019
13
June, 2019
11
May, 2023
4
October, 2019
2
July, 2019
Available data
98
bed narrowPeak
64
xls
41
bam
34
bigWig
32
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
124
Homo sapiens
Biosample type
124
tissue
Organ
124
kidney
Project
124
AMP
Genome assembly (visualization)
108
GRCh38
36
hg19
Lab
82
Katalin Susztak, Upenn
42
AMP-T2D consortium
assay_slims!
Transcription
BIOSAMPLE
ASSAY
124 results
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ATAC-seq
ChIP-seq
DNase-seq
snATAC-seq
FAIRE-seq
Hi-C
RRBS
tissue
kidney
75
27
13
6
1
1
1
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