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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
69
DNase-seq
37
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
151
DNA accessibility
Transcription
37
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
73
August, 2021
68
June, 2019
23
April, 2019
15
October, 2019
11
May, 2023
3
February, 2021
2
December, 2019
2
July, 2019
2
March, 2020
Available data
161
bed narrowPeak
107
bam
97
bigWig
88
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
199
Homo sapiens
Biosample type
184
tissue
primary cell
15
cell line
Organ
589
liver
276
pancreas
244
brain
199
kidney
179
connective tissue
178
heart
134
blood vessel
134
vasculature
115
limb
96
bone element
90
adipose tissue
83
artery
80
epithelium
75
musculature of body
61
blood
61
bodily fluid
38
nerve
37
eye
25
spleen
23
embryo
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
199
AMP
Genome assembly (visualization)
171
GRCh38
98
hg19
Lab
115
AMP-T2D consortium
82
Katalin Susztak, Upenn
2
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
2
audit script error
assay_slims!
Transcription
biosample_type!
primary cell
BIOSAMPLE
ASSAY
199 results
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Clear Filters
ATAC-seq
DNase-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RRBS
tissue
kidney
75
13
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 9 more…
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 vector
3
1
RCC 7860 HIF2a over-expression
3
HEK293T
2
RCC 7860 VHL
1
+ See 1 more…
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