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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
8
ATAC-seq
6
DNase-seq
4
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
Transcription
29
DNA binding
15
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
6
control
6
transcription factor
2
RNA binding protein
Date released
21
October, 2019
14
February, 2021
6
November, 2017
4
June, 2019
3
July, 2019
1
March, 2020
Available data
44
bam
33
bed narrowPeak
31
bigWig
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
6
fastq
6
tagAlign
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
49
Homo sapiens
Biosample type
tissue
35
primary cell
14
cell line
Organ
411
liver
310
epithelium
253
pancreas
113
connective tissue
69
blood
69
bodily fluid
49
vasculature
45
kidney
43
blood vessel
23
embryo
23
heart
22
vein
18
brain
14
artery
12
musculature of body
5
eye
1
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
Project
49
AMP
Genome assembly (visualization)
41
hg19
32
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
biosample_type!
tissue
BIOSAMPLE
ASSAY
49 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
8
See all biosamples
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