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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
279
DNA binding
257
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
57
August, 2017
46
September, 2018
35
February, 2021
31
June, 2019
28
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
1
March, 2020
1
March, 2023
1
November, 2020
Available data
330
bigWig
328
bam
266
bed narrowPeak
160
fastq
101
zippedFastqFolder
100
tagAlign
80
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
8
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
621
Homo sapiens
Biosample type
1332
tissue
621
primary cell
545
cell line
255
in vitro differentiated cells
8
stem cell
Organ
225
epithelium
191
pancreas
29
vasculature
25
blood vessel
20
vein
18
connective tissue
18
kidney
13
brain
11
musculature of body
8
blood
8
bodily fluid
7
liver
6
heart
4
eye
1
bone element
1
bone marrow
Project
365
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
352
hg19
257
GRCh38
Lab
332
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
40
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
621 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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