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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
197
ATAC-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
283
DNA accessibility
218
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
199
histone
199
histone modification
106
broad histone mark
93
narrow histone mark
19
control
RNA binding protein
8
transcription factor
Date released
151
May, 2021
101
May, 2022
100
May, 2020
August, 2017
51
June, 2019
46
September, 2018
35
February, 2021
32
October, 2019
13
July, 2019
12
February, 2023
8
January, 2021
7
August, 2020
6
November, 2017
5
September, 2017
4
August, 2021
4
May, 2019
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
305
bigWig
291
bam
254
bed narrowPeak
101
zippedFastqFolder
100
fastq
88
tagAlign
82
bigBed narrowPeak
35
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
585
Homo sapiens
Biosample type
1329
tissue
585
primary cell
482
cell line
181
in vitro differentiated cells
8
stem cell
Organ
209
epithelium
150
pancreas
33
vasculature
28
blood vessel
28
kidney
23
connective tissue
22
vein
15
brain
12
musculature of body
9
liver
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
329
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
319
hg19
234
GRCh38
Lab
296
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
40
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
assay_slims!
Transcription
month_released!
August, 2017
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
585 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
34
31
1
Langerhans cell
48
pancreatic beta cell
22
16
1
CD8-positive, alpha-beta T cell
33
2
1
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