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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
262
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
10
RRBS
8
Hi-C
1
DNAme array
Assay category
Transcription
285
DNA accessibility
262
DNA binding
58
DNA methylation
8
3D chromatin structure
Target of assay
222
histone
222
histone modification
113
broad histone mark
109
narrow histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
46
September, 2018
35
February, 2021
13
July, 2019
12
February, 2023
11
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2023
Available data
344
bigWig
337
bam
282
bed narrowPeak
161
fastq
101
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
1
bed bed3
Organism
630
Homo sapiens
Biosample type
1510
tissue
630
primary cell
547
cell line
256
in vitro differentiated cells
8
stem cell
Organ
243
epithelium
191
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
374
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
357
hg19
272
GRCh38
Lab
341
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
43
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
organ_slims!
vein
BIOSAMPLE
ASSAY
630 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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