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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
910
ChIP-seq
260
ATAC-seq
178
DNase-seq
87
RNA microarray
29
pCHi-C
28
snATAC-seq
27
WGBS
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
GRO-seq
Assay category
Transcription
910
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
630
histone modification
629
histone
325
narrow histone mark
304
broad histone mark
188
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
195
August, 2017
163
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
81
February, 2023
80
April, 2019
74
October, 2018
73
August, 2021
51
December, 2017
50
May, 2020
40
May, 2024
39
May, 2022
35
March, 2020
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
3
January, 2018
2
December, 2019
1
August, 2022
1
May, 2021
Available data
987
bam
986
bed narrowPeak
858
bigWig
561
bigBed narrowPeak
278
fastq
238
tagAlign
213
bed broadPeak
208
bed bed3+
176
bigBed broadPeak
85
txt
64
xls
30
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1549
Homo sapiens
Biosample type
1550
tissue
652
primary cell
547
cell line
256
in vitro differentiated cells
8
stem cell
Organ
244
brain
214
pancreas
204
heart
187
liver
184
kidney
120
blood vessel
120
vasculature
115
limb
96
bone element
91
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1524
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
944
GRCh38
840
hg19
1
hg18
Lab
1355
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
BIOSAMPLE
ASSAY
1558 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
GRO-seq
tissue
liver
145
20
2
1
3
1
1
islet of Langerhans
71
68
1
4
7
3
1
1
4
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
1
4
1
1
+ See 158 more…
stem cell
hESC
3
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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