Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
575
ChIP-seq
177
DNase-seq
43
ATAC-seq
16
WGBS
4
FAIRE-seq
Assay category
Transcription
575
DNA binding
224
DNA accessibility
16
DNA methylation
Target of assay
487
histone modification
486
histone
253
narrow histone mark
233
broad histone mark
88
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
152
October, 2019
93
May, 2019
89
August, 2017
65
April, 2019
57
November, 2017
45
October, 2018
36
December, 2017
27
May, 2020
23
November, 2018
20
May, 2022
16
July, 2019
14
October, 2017
6
January, 2019
4
March, 2020
3
December, 2018
2
January, 2018
Available data
984
bam
944
bed narrowPeak
815
bigWig
561
bigBed narrowPeak
274
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
809
Homo sapiens
Biosample type
815
tissue
418
cell line
359
primary cell
132
in vitro differentiated cells
3
stem cell
Organ
193
brain
113
liver
104
heart
102
pancreas
89
kidney
87
limb
66
blood vessel
66
vasculature
53
musculature of body
27
adipose tissue
27
artery
27
connective tissue
27
nerve
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
813
AMP
2
T1D
Genome assembly (visualization)
755
GRCh38
730
hg19
Lab
794
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
BIOSAMPLE
ASSAY
815 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
liver
82
2
20
body of pancreas
26
4
4
2
heart left ventricle
29
3
2
2
islet of Langerhans
29
1
3
1
kidney
20
13
1
+ See 123 more…
See all biosamples
Download