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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
844
ChIP-seq
260
ATAC-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
844
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
193
August, 2017
163
June, 2019
111
May, 2019
95
February, 2021
82
November, 2017
81
February, 2023
76
April, 2019
73
August, 2021
63
October, 2018
50
May, 2020
46
December, 2017
39
May, 2022
31
March, 2020
30
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
11
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
961
bam
923
bed narrowPeak
793
bigWig
541
bigBed narrowPeak
259
fastq
238
tagAlign
213
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1478
Homo sapiens
Biosample type
1487
tissue
642
primary cell
482
cell line
245
in vitro differentiated cells
8
stem cell
Organ
244
brain
206
pancreas
185
liver
183
kidney
159
heart
117
blood vessel
117
vasculature
115
limb
96
bone element
85
connective tissue
84
adipose tissue
75
musculature of body
68
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1453
AMP
24
T1D
10
LungMap
Genome assembly (visualization)
879
GRCh38
815
hg19
Lab
1324
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
1487 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
144
20
2
3
1
1
1
islet of Langerhans
69
68
1
7
4
3
1
1
4
kidney
26
75
13
6
1
1
1
bone element
84
heart left ventricle
32
2
3
4
1
1
1
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