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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
494
ChIP-seq
23
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
whole genome sequencing assay
Assay category
494
DNA binding
Transcription
24
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
294
transcription factor
108
control
89
histone modification
88
histone
82
recombinant protein
54
RNA binding protein
54
narrow histone mark
34
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
257
November, 2017
63
December, 2017
54
August, 2017
51
May, 2020
50
November, 2018
26
August, 2021
20
May, 2022
6
October, 2019
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
Available data
519
bam
460
bigWig
460
fastq
441
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
535
Homo sapiens
Biosample type
329
cell line
184
tissue
15
in vitro differentiated cells
7
primary cell
Organ
535
liver
446
pancreas
301
epithelium
215
brain
193
connective tissue
157
heart
152
vasculature
151
kidney
150
blood vessel
97
bone element
87
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
41
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
18
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
535
AMP
Genome assembly (visualization)
400
hg19
320
GRCh38
Lab
493
AMP-T2D consortium
22
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
535 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
DNase-seq
whole genome sequencing assay
cell line
HepG2
320
1
1
2
2
2
1
tissue
liver
145
20
3
1
1
1
right lobe of liver
10
1
1
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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