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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
12
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
6
January, 2019
6
November, 2018
3
December, 2018
1
March, 2020
1
October, 2017
Available data
16
bam
16
bigWig
16
fastq
14
bed narrowPeak
13
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
17
Homo sapiens
Biosample type
17
tissue
Organ
489
liver
413
pancreas
291
epithelium
231
brain
217
kidney
207
heart
167
connective tissue
145
vasculature
140
blood vessel
98
limb
97
bone element
81
musculature of body
74
artery
66
adipose tissue
63
blood
63
bodily fluid
41
eye
27
nerve
20
vein
18
ureter
17
spleen
16
embryo
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
17
AMP
Genome assembly (visualization)
16
GRCh38
14
hg19
Lab
17
AMP-T2D consortium
assay_slims!
Transcription
files.file_type!
hdf5
target.investigated_as!
control
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
spleen
12
2
1
1
1
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