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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
3
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
Transcription
37
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
23
October, 2018
17
August, 2017
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
44
bam
44
fastq
27
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
44
Homo sapiens
Biosample type
44
tissue
Organ
519
liver
277
pancreas
231
brain
171
epithelium
141
heart
132
kidney
127
vasculature
122
blood vessel
119
connective tissue
110
limb
60
blood
60
bodily fluid
51
musculature of body
48
artery
44
adipose tissue
38
nerve
24
spleen
22
embryo
20
vein
18
ureter
8
bone element
8
skeleton
7
eye
1
pituitary gland
Project
44
AMP
Genome assembly (visualization)
25
GRCh38
23
hg19
Lab
44
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
white adipose tissue
12
adipose tissue
2
2
adipose tissue(adipose white tissue)
1
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