Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
22
ATAC-seq
8
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
Transcription
22
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
151
May, 2020
120
May, 2019
119
February, 2021
94
December, 2017
90
February, 2023
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
May, 2021
41
November, 2019
38
August, 2021
35
December, 2018
25
January, 2019
24
February, 2018
22
October, 2017
11
September, 2017
8
January, 2018
2
December, 2019
2
November, 2020
1
August, 2018
1
August, 2022
1
May, 2022
1
October, 2022
Available data
84
txt
27
bam
23
bed narrowPeak
8
tagAlign
6
bigWig
4
bed bedgraph
3
tsv
2
bed bed3
2
bed bed3+
Organism
119
Homo sapiens
Biosample type
95
tissue
18
cell line
4
in vitro differentiated cells
2
primary cell
Organ
92
bone element
14
artery
14
blood vessel
14
heart
14
vasculature
8
skeleton
6
connective tissue
6
limb
3
kidney
2
liver
Project
119
AMP
Genome assembly (visualization)
29
hg19
23
GRCh38
Lab
119
AMP-T2D consortium
33
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
1
inconsistent replicate
assay_slims!
Transcription
BIOSAMPLE
ASSAY
119 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
ATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
6
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
adipocyte
4
primary cell
osteoblast
1
1
See all biosamples
Download