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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
6
WGBS
5
ATAC-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
Transcription
73
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
November, 2019
1
October, 2017
1
October, 2019
Available data
44
fastq
43
bam
27
bigWig
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tsv
Organism
88
Homo sapiens
Biosample type
88
tissue
1
in vitro differentiated cells
Organ
556
liver
277
pancreas
262
brain
203
epithelium
197
connective tissue
187
heart
169
vasculature
163
blood vessel
145
kidney
115
limb
96
bone element
89
adipose tissue
87
musculature of body
83
artery
61
blood
61
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
26
hg19
24
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
Transcription
month_released!
November, 2019
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
in vitro differentiated cells
white fat cell
1
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