Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
46
ATAC-seq
9
DNase-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
99
DNA binding
Transcription
56
DNA accessibility
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
46
October, 2019
35
February, 2023
14
February, 2021
5
June, 2019
4
July, 2019
3
November, 2017
1
March, 2020
Available data
129
bed narrowPeak
122
bam
90
bigWig
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
1
tsv
Organism
158
Homo sapiens
Biosample type
119
tissue
25
primary cell
14
cell line
Organ
553
liver
308
pancreas
259
brain
213
epithelium
197
connective tissue
184
heart
164
vasculature
158
blood vessel
145
kidney
111
limb
96
bone element
90
adipose tissue
83
artery
81
musculature of body
61
blood
61
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
20
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
158
AMP
Genome assembly (visualization)
129
GRCh38
96
hg19
Lab
158
AMP-T2D consortium
assay_slims!
Transcription
3D chromatin structure
BIOSAMPLE
ASSAY
158 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
ascending aorta
16
1
thoracic aorta
16
1
aorta
13
2
1
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
6
8
Download