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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
32
DNase-seq
3
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
203
DNA binding
36
DNA accessibility
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
25
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
October, 2017
7
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
222
bam
203
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
104
tagAlign
44
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
11
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
246
Homo sapiens
Biosample type
228
tissue
18
primary cell
Organ
556
liver
308
pancreas
246
brain
218
epithelium
197
connective tissue
187
heart
169
vasculature
163
blood vessel
145
kidney
115
limb
96
bone element
89
adipose tissue
87
musculature of body
83
artery
61
blood
61
bodily fluid
42
eye
38
nerve
24
spleen
23
embryo
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
246
AMP
Genome assembly (visualization)
198
GRCh38
146
hg19
Lab
246
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_slims!
Transcription
month_released!
October, 2017
BIOSAMPLE
ASSAY
246 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
5
14
1
1
caudate nucleus
15
1
substantia nigra
16
angular gyrus
15
+ See 73 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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