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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ATAC-seq
18
ChIP-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
Transcription
21
DNA accessibility
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
26
August, 2021
20
May, 2022
2
March, 2019
Available data
34
bed narrowPeak
34
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
48
Homo sapiens
Biosample type
25
cell line
23
tissue
Organ
42
liver
3
pancreas
2
kidney
Project
48
AMP
Genome assembly (visualization)
37
hg19
1
GRCh38
Lab
2436
AMP-T2D consortium
228
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
48 results
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ATAC-seq
ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
liver
20
islet of Langerhans
1
2
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