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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
34
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
52
DNA accessibility
Date released
22
May, 2021
18
February, 2023
18
May, 2022
16
January, 2021
Available data
18
bam
18
bed narrowPeak
18
fastq
5
bigWig
Organism
74
Homo sapiens
Biosample type
40
tissue
24
primary cell
5
cell line
5
in vitro differentiated cells
Organ
39
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
51
T1D
23
AMP
Genome assembly (visualization)
23
hg19
Lab
777
AMP-T2D consortium
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
74
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
74 results
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ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
29
6
pancreas
4
thymus
1
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
3
2
in vitro differentiated cells
embryonic stem cell
5
See all biosamples
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