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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
16
pCHi-C
8
snATAC-seq
5
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
Transcription
13
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
175
May, 2021
8
January, 2021
5
February, 2023
Available data
122
bigWig
114
bed narrowPeak
84
bam
84
tagAlign
Organism
188
Homo sapiens
Biosample type
141
primary cell
42
in vitro differentiated cells
tissue
5
cell line
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
113
T1D
75
AMP
Genome assembly (visualization)
122
hg19
84
GRCh38
Lab
1089
AMP-T2D consortium
188
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
25
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
1
ITG
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
biosample_type!
tissue
BIOSAMPLE
ASSAY
188 results
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ChIP-seq
pCHi-C
snATAC-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
in vitro differentiated cells
embryonic stem cell
37
5
cell line
EndoC_BH1
3
2
See all biosamples
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