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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ATAC-seq
28
ChIP-seq
2
Hi-C
Assay category
34
DNA accessibility
28
DNA binding
Transcription
2
3D chromatin structure
Target of assay
22
histone
22
histone modification
16
broad histone mark
6
narrow histone mark
5
control
1
RNA binding protein
1
transcription factor
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
54
bam
49
bed narrowPeak
25
bigWig
17
fastq
14
tagAlign
6
bigBed narrowPeak
4
bed broadPeak
2
bedpe bed3+
2
hic
Organism
64
Homo sapiens
Biosample type
44
tissue
15
cell line
5
in vitro differentiated cells
Organ
40
pancreas
16
brain
15
epithelium
2
adipose tissue
2
connective tissue
1
spleen
Project
64
AMP
Genome assembly (visualization)
52
hg19
51
GRCh38
Lab
63
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
21
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
Transcription
month_released!
April, 2019
BIOSAMPLE
ASSAY
64 results
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ATAC-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
20
1
brain
15
body of pancreas
4
adipose tissue(adipose white tissue)
1
cerebellum (Hemisphere)
1
+ See 2 more…
cell line
EndoC_BH1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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