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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
280
ChIP-seq
254
ATAC-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
Transcription
462
DNA accessibility
280
DNA binding
20
DNA methylation
12
3D chromatin structure
Target of assay
628
histone modification
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
163
June, 2019
95
February, 2021
81
February, 2023
73
August, 2021
72
August, 2017
52
October, 2019
44
October, 2018
43
December, 2017
39
May, 2022
July, 2019
29
March, 2020
26
May, 2019
26
November, 2018
23
May, 2020
21
November, 2019
20
April, 2019
12
November, 2017
11
May, 2023
11
October, 2017
10
April, 2020
8
January, 2021
7
December, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2021
Available data
502
bam
458
bed narrowPeak
318
bigWig
247
bigBed narrowPeak
201
fastq
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
85
txt
64
xls
52
tagAlign
26
tsv
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
Organism
890
Homo sapiens
Biosample type
893
tissue
509
cell line
402
primary cell
144
in vitro differentiated cells
6
stem cell
Organ
162
kidney
139
pancreas
117
liver
96
bone element
96
heart
62
blood vessel
62
vasculature
61
limb
57
adipose tissue
57
brain
57
connective tissue
48
artery
45
musculature of body
35
eye
19
spleen
18
ureter
14
nerve
13
epithelium
12
skeleton
11
lung
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
861
AMP
22
T1D
10
LungMap
Genome assembly (visualization)
434
GRCh38
387
hg19
Lab
725
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
18
missing controlled_by
assay_slims!
Transcription
month_released!
July, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
893 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
liver
81
20
2
1
3
1
1
islet of Langerhans
20
68
1
7
4
3
4
1
kidney
7
75
13
6
1
bone element
84
coronary artery
3
35
2
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