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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ATAC-seq
29
ChIP-seq
9
DNase-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
Transcription
54
DNA accessibility
29
DNA binding
3
3D chromatin structure
Target of assay
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
35
February, 2023
14
February, 2021
14
May, 2019
14
October, 2019
July, 2019
5
June, 2019
3
March, 2020
2
November, 2017
Available data
62
bed narrowPeak
48
bam
20
bigWig
14
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
hic
2
bedpe bed3+
2
fastq
1
tar
1
tsv
Organism
87
Homo sapiens
Biosample type
62
tissue
14
cell line
11
primary cell
Organ
493
liver
314
pancreas
222
epithelium
194
kidney
123
connective tissue
116
heart
97
bone element
91
vasculature
87
blood vessel
68
blood
68
bodily fluid
68
brain
62
artery
61
limb
58
adipose tissue
48
musculature of body
38
eye
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
11
lung
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
61
GRCh38
30
hg19
Lab
87
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
Transcription
month_released!
July, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
87 results
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ATAC-seq
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
35
3
2
tibial artery
1
5
2
ascending aorta
4
1
thoracic aorta
5
aorta
2
1
1
cell line
smooth muscle cell of the coronary artery
8
6
primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
2
1
kidney capillary endothelial cell
1
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