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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
224
ChIP-seq
84
ATAC-seq
10
RRBS
9
Hi-C
5
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
Transcription
224
DNA binding
90
DNA accessibility
10
DNA methylation
9
3D chromatin structure
Target of assay
211
histone
211
histone modification
110
broad histone mark
101
narrow histone mark
7
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
130
May, 2021
47
August, 2017
46
September, 2018
45
May, 2020
June, 2019
24
October, 2019
13
July, 2019
9
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
3
October, 2022
2
February, 2021
2
November, 2020
1
March, 2020
Available data
302
bigWig
282
bam
248
bed narrowPeak
106
fastq
99
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
11
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
334
Homo sapiens
Biosample type
690
tissue
426
cell line
334
primary cell
170
in vitro differentiated cells
3
stem cell
Organ
105
epithelium
83
pancreas
26
vasculature
22
blood vessel
17
vein
13
brain
13
kidney
6
connective tissue
6
liver
1
eye
1
heart
1
musculature of body
Project
247
AMP
84
T1D
3
HPAP
Genome assembly (visualization)
334
hg19
237
GRCh38
Lab
214
AMP-T2D consortium
117
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
month_released!
June, 2019
BIOSAMPLE
ASSAY
334 results
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ChIP-seq
ATAC-seq
RRBS
Hi-C
DNase-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
15
CD8-positive, alpha-beta T cell
33
2
pancreatic endocrine cell
23
skeletal muscle myoblast
15
1
2
endothelial cell of umbilical vein
12
2
2
1
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