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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
446
ChIP-seq
242
ATAC-seq
56
snATAC-seq
47
WGBS
22
pCHi-C
14
Hi-C
10
RRBS
8
DNase-seq
4
GRO-seq
2
Capture-C
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
446
DNA binding
307
DNA accessibility
58
DNA methylation
14
3D chromatin structure
Target of assay
330
histone
330
histone modification
170
broad histone mark
159
narrow histone mark
61
control
55
transcription factor
17
RNA binding protein
4
chromatin remodeller
Date released
199
May, 2021
127
August, 2017
101
May, 2022
100
May, 2020
June, 2019
46
September, 2018
43
December, 2017
39
August, 2021
39
February, 2021
38
October, 2019
24
February, 2018
24
February, 2023
13
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
7
March, 2020
5
May, 2019
5
November, 2019
5
September, 2017
4
January, 2018
3
October, 2022
3
September, 2020
2
November, 2020
1
August, 2018
1
March, 2023
Available data
466
bam
444
bigWig
380
bed narrowPeak
287
fastq
140
tagAlign
101
zippedFastqFolder
79
bigBed narrowPeak
36
bed bed3+
26
bed broadPeak
26
bigBed broadPeak
20
tsv
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bedgraph
6
bed bed3
4
hdf5
3
cool
3
txt
2
ibed
1
tar
Organism
853
Homo sapiens
Biosample type
1387
tissue
597
primary cell
547
cell line
256
in vitro differentiated cells
8
stem cell
Organ
245
epithelium
194
pancreas
95
connective tissue
31
vasculature
27
blood vessel
23
embryo
22
liver
22
vein
17
kidney
13
brain
8
blood
8
bodily fluid
1
adipose tissue
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
597
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
504
hg19
375
GRCh38
4
hg18
Lab
515
AMP-T2D consortium
183
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
7
Struan F.A. Grant, CHOP
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
50
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
month_released!
June, 2019
BIOSAMPLE
ASSAY
853 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
GRO-seq
Capture-C
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
+ See 63 more…
in vitro differentiated cells
adipocyte
67
8
1
1
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
+ See 19 more…
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